Plot hole: In the end of the episode, Wolverine is seen recuperating after surgery removes the microchip in his brain, and his head is bandaged. Performing invasive surgery on Wolverine's brain isn't possible, since that would require going through his adamantium-infused skull and no conventional material is capable of that. Only a less invasive technique (such as going through the cranial sutres or cranial foramen) would have been effective and that most likely would not have required Wolverine's head to be bandaged (especially with his rapid healing mutant ability).
Plot hole: The way slipstream works is wildly inconsistent across the show. Sometimes, they have to travel a significant distance to find the nearest slip point, and other times, when it's required by the plot, there's a slip point conveniently right next to the ship.
Suggested correction: How is this a mistake? Unless the points are evenly distributed and all close to each other, they are going to be different distances away.