When Morpheus first takes Neo into the Construct and is explaining it all to him, you can see Neo's reflection in his glasses, but when the camera shows Neo, he is wearing different clothes and standing in a different position and moving. See more...
When Neo is at work in his supervisor's office getting yelled at, notice the window washers. When the camera shoots from the outside of the building, look at the soap on the window.. it strangely resembles the Matrix pattern as displayed on a computer screen. Also take notice of the look of confusion on Neo's face - like he had seen that pattern somewhere before. See more...
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When Agent Smith is interrogating Neo, after Smith has sealed Neo's mouth shut and he is backed into the corner, when the camera cuts back to Smith you can clearly see a reflection in his glasses of Neo still sitting down in the chair.
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