Continuity: During the catapult launch for the SAM suppression mission, we can see two Shrike missiles on the right wing pylons. In the next shot, there is only one. At this point they still haven't reached the SAM site so they wouldn't need to fire one. A little later in another shot (right before they switch to active radar) we see two Shrikes again.
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Flight of the Intruder mistakes
Factual error: Throughout the movie where there are shots of the pilot's hands they are not wearing gloves. In all the services gloves are required safety equipment for flight crew members.