Continuity mistake: In the subway fight scene, the shot where the agent is holding Neo down while the train is coming, you can see the Agent's tie in front of his arms, in the shot just as Neo is getting ready to jump with the agent you can see the agent's tie neatly pinned back with a tie clip. (01:57:48)
Revealing mistake: When Neo and Agent Smith are fighting on the subway tracks, Neo leaps up to avoid being hit by the train. While the shot is in slow motion, you can actually see the wire supporting Keanu Reeves (just look at Neo's hands grabbing them). The wire becomes momentarily visible right when he is reaching the highest point of this jump. (01:58:15)
Continuity mistake: When Trinity is speaking to Neo near the end of the film when he is "dead", her hair falls from behind her ears then goes back again then is slightly off again. (01:59:05)
Visible crew/equipment: When Smith and the other Agents turn round in the corridor at the end the white reflective screen is visible in Smith's left lens as he is turning. (01:59:40)
Continuity mistake: In the scene following Neo's death and 'rebirth' he stops the bullets fired by the agents and they fall to the floor. However when we see Neo walking forward, the bullets have disappeared along with the blood stain on the wall from when he was shot. (02:00:45)
Continuity mistake: Near the end when Neo runs and jumps into Agent Smith's body, the other two agents are shown standing at the end of the hallway. If you look closely at the shot of the agents after Agent Smith explodes, the tie clip of the agent on the left side of the screen is angled diagonally across his tie. Neo flexes the walls, and in the next shot of the agents the tie clip has returned to where it should be - horizontally across the tie. (02:01:20)
Continuity mistake: When Neo puts his glasses on at the end and looks up you can see a blonde woman walk behind him left to right. In the very next shot from above him there is no one behind him except a large empty pavement. The woman has disappeared. (02:03:45)
Revealing mistake: When Neo stops the bullets flying at him at the end you can see that the bullets don't have any ridges from the rifling. (02:05:15)
Continuity mistake: Ground level shots show everyone driving on the right side of the road, but when there are aerial shots, you can see everyone driving on the left side of the road.
Visible crew/equipment: When Trinity's getting arrested (near the start) and two cops are kicked into the wall, you can see a wire around the cop on the right leg area, to make him fly across the room. (Seen clearer in slow motion.)
Visible crew/equipment: When Neo and Smith have a fight at the train station, before Smith drags Neo by the legs and tosses him onto the train track, he punches Neo into another wall. Just after he does this, a red piece of equipment is visible to the left of the screen, being pulled quickly out of shot.
Visible crew/equipment: In the Oracle's house, when Neo is watching the spoon, a reflection of the camera is visible on it.
Other mistake: When Morpheus makes his escape, Agent Smith shoots through the walls with a noticeable time between shots. However when you see the bullets in motion (the 'bullet time' sequence), they're so close together in time that Morpheus doesn't appear to move in the interval between shots. Even if these are supposed to be later shots they could not be fired so close together either by the agents or by the guns used. The first two bullets are some distance behind Morpheus, corresponding to the change of direction of the shots fired by agent Smith to track Morpheus' movement - this also doesn't fit with the shots seen in the 'bullet time' sequence.
Visible crew/equipment: When Neo is in the car and asking Trinity if she's seen the Oracle, the white reflective screen is visible in her glasses where the windshield should be.
Suggested correction: No, that is the windscreen. If the sun was shining directly onto the windscreen, it would appear bright in a reflection.
Continuity mistake: On the rooftop when Neo and Trinity are trying to save Morpheus, one of the Agents starts shooting at Neo. You can see the glass behind Neo doesn't shatter whilst he is shooting.
Audio problem: In the lobby shootout, you can see two soldiers firing at Neo just before he does his cartwheel. Both of their weapons have the sound of an M16, but the first soldier is actually holding a pump action shotgun. You can even see the shell being ejected.
Visible crew/equipment: In the "Desert of the Real" scene where Morpheus is sitting on the chair while explaining the Matrix to Neo, at a certain point he raises the head to the sky and in that moment the boom mic is visible reflected on his sunglasses.
Continuity mistake: When Morpheus shows Neo the agent training simulation, the girl in red turns into an agent. When they pause the simulation you can see the reflection of Neo with a gun pointed at his head in Morpheus' glasses. When you look in one shot there is a visible white line/mark (scenery?) between the gun and Neo, in the next shot it is gone and then right at the end in the final shot it's back again.
Continuity mistake: Near the start, when Agent Smith jumps over the building and the police officer in the front says, "It's impossible," look closely in the background when the agent lands. You can see it's a different officer than the one that said it.
Continuity mistake: When Neo and Morpheus are going to see the Oracle, they approach the elevator. Neo is standing on the right and Morpheus is standing on the left. Yet when they enter the elevator, Morpheus and Neo both come from the right.
