Continuity mistake: When Marcus enters the classroom he leans up against a wall and there are 2 girls in the front row next to him. When the bell rings, the girls are the first two students to leave the classroom. Seconds later when Indy looks over to Marcus the same two girls are just getting up from their desks.
Continuity mistake: Indy and a Nazi soldier are fighting in the cab of the truck when they come to a place where a stone building is being built. As the truck is driving into the scaffolding, several rocks come down and hit the truck and remove the rack from the top. Moments later the rack is back in place. (02:50:00 - 03:01:00)
Continuity mistake: As the big German engages Indy in the fight, Marion is removing the chocks from one of the wheels. In the wide shot you don't see her at all, even climbing the plane to knock out of the pilot.
Other mistake: After Indy shoots the driver of the truck that Marion is supposedly in, the camera looks at the driver's bloody hand falling limp. In the shot of the truck tipping over, you see the stunt driver working the wheel.
Continuity mistake: When Indiana is confronted by the Cairo swordsman, he already has his left shoulder pointing towards his opponent in the shot where the crowd scatters. But in the following shot, where the swordsman is first seen, Indiana has his right shoulder pointing forward and is just turning around to his left side. (00:40:14)
Continuity mistake: While escaping from the boulder, right before the spiderweb scene, Indy runs facing forward and makes a right turn. A shot later from a wide angle he is facing backwards.
Continuity mistake: When Indy is driving the truck, chasing Belloq and his Nazi cohorts, the last Nazi guarding the Ark of the Covenant climbs to the driver's side of the truck and kicks Indy away from the steering wheel. The first time he punches Indy in the arm, Indy's blood is on his fist. However, the second time he punches Indy in the same spot, there is no blood on his fist.
Visible crew/equipment: When Indiana is thrown through the windshield of the truck during the truck chase scene, there is another man in the driver's seat leaning toward the door, driving the truck with dark hair. This is noticeable just as the glass is broken.
Visible crew/equipment: As the bad guys are leaving the dig site for Cairo, there is a shot of the black vehicle (lead car) looking right at the driver. On the bottom of the shot is a shadow of film equipment that shouldn't be there. The shot lingers, so the shadow is very visible. (01:22:50)
Other mistake: In the bar shootout, a man is shot in the head. The bullet hits him in his hat right in the middle of his forehead, and then his hat falls off. But we then see a close-up of his face, and there's no bullet wound in his forehead or anywhere else.
Continuity mistake: In the bar shootout, a man is shot in the head, and as Marion screams in shock she's holding onto the table. In the very next shot her hand is much lower.
Continuity mistake: When chasing Indy in the truck that he has driven into a fruit market, the Germans in their car are surrounded by fruit sellers. One gives a German soldier a melon, who promptly throws it to the ground on the left side of the car. When the car pulls away, the broken melon lies on the right side.
Revealing mistake: As the truck tips to the left, the stunt driver is seen steering, and appears to be activating the ram to finish the stunt.
Continuity mistake: Indy swings on the vine, and his bag is on his hip. As he gets up on the plane, it disappears, but the strap is on his shoulder again in the cockpit.
Other mistake: In the opening scene Indiana is with horses and scouts. A few minutes later he is running for his life and in a few moments he's at a waiting plane. Why does he need scouts and horses for the cave is in walking distance from the plane and how did the scouts and horses get there?
Character mistake: Watch the extras playing the Cairo civilians walking around just before the big swordsman reveals himself to Indy. Several of them are just aimlessly walking back and forth as if they have no idea where to go.
Continuity mistake: Arnold holds a hot stick of metal to Marion's face in her bar, threatening her. In the opposite angle, the metal is nowhere to be seen when it should be right next to her face. Cut back to the other angle and we see it again.