Continuity: At the beginning when Soundwave is attacking the bunker as he ejects his cassettes he says Buzzsaw (the gold condor) but instead ejects Laserbeak (the red condor).
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Continuity: Red Alert's door abbreviation has always been an F, then a shield, then a D, but when he is racing through the city when the Autobots are looking for him, he passes them and the abbreviation is: E, shield, D.
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Audio problem: At the end, Inferno comes out from the blaze with Red Alert in his arms, Red Alert then says something, but his mouth doesn't match what he says.