Audio problem: In the final fight scene between Liu and Shang Tsung, Liu hits Shang in the face repeatedly, but there is one extra hit sound for which there is no motion.
Audio problem: There are several times throughout the film when Miss Minchin is playing her harp and her finger movements does not match with what we hear.
Audio problem: When the Bat Exterminator is pointing at the book in the attic, he says "Some kid said she saw a bunch of those back in the 60's." His mouth is visible in the screen, however it doesn't move at all. (00:18:50)
Audio problem: Another audio problem in the same scene: As Brian Engle is approaching the cockpit, there is some more muttering, presumably in this order (using actors initials: MLC: Right, Good God. PW: Is he (muffled) MLC: I know, I seem real strange. He's outta control.
Audio problem: When Drosselmeier and his fellow adviser, the astrology scholar, run into Drosselmeier's cousin and are presented with the Crackatook nut, the scholar snatches it and then exclaims, "it is a Crackatook nut!" After he finishes saying that, his mouth continues to move for an extra syllable that looks like he says nut twice.
Audio problem: When Andy is in his cardboard Buzz costume, and says "Buzz Lightyear to the rescue, " his mouth doesn't move.