Continuity mistake: This episode takes place over one day. It's Olivia's birthday at the start of the episode, and at night, she gets the card from her stepfather, implying that it's still the same day. Right before Broyles yells at Olivia in the Harvard halls, there is an establishing shot of Harvard where it is nighttime outside, but inside the building, there's sunlight coming through the windows.
Plot hole: When Charlie looks up the file on David Esterbrook, he says that the file shows that Esterbrook is directly responsible for INtREPUS' "controversial" R&D, including pre-natal gene therapy, human/animal hybridization, and viral warfare. Yet later, Olivia says she can find no dirt on Esterbrook who is, in her words, "cleaner than snow". If INtREPUS kept records of their illegal endeavours, then how come Olivia can't find them when the time calls for it?
Answer: He helped his father evade capture, impeding the investigation.