Plot hole: In a previous episode Link says he ditched the gun after he was framed and that he chose the gun the night before. Earlier in the episode, Michael met Link off the street, then went to a bar and met Veronica, then those two go to Michael's apartment. At the apartment, Michael gets the call from Link who is trying to get Michael to talk him out of killing Stedman. But how could he choose a gun the night before when he is asked to kill Stedman and calls Michael on the same day?
Prison Break (2005)
1 plot hole in Brother's Keeper
Starring: Dominic Purcell, Robert Knepper, Wentworth Miller, Amaury Nolasco
And Then There Were 7 - S1-E11
Continuity mistake: When Quinn falls in the well, he falls through and subsequently destroys the well cover. At the end of the episode when the Secret Service boys show up, an undamaged cover is lying next to the well, which Kellerman uses to cover it up. (00:29:30 - 00:38:30)
Michael Scofield: This is going wrong in every possible way. (00:05:10)
More trivia for Prison Break
Question: How does Don Self know that Miriam should work at Gate when nobody knew about the location of Scylla? Or Whistler wanting to work there?
Answer: Because Miriam was an agent.
But that still doesn't make sense because nobody knew where Scylla was.
He knew that GATE was mentioned in the bird book. He worked with Whistler and had probably discussed GATE with him, so it was clear enough that it was a big part of the plan to get Scylla. Sending an agent to work there in any position would've been a big help for intel, as she could assess the environment and perhaps uncover what Whistler's plan was. He didn't anticipate T-bag's hijacking of the plan, hence why he sent Miriam and not a more combat-trained agent. She was only there for information.
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Answer: Don Self actually worked with Whistler before he died. And Whistler with the bird book actually knew where Scylla was.