Bones
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Pilot - S1-E1

Continuity mistake: At the funeral, Bones places a rose on top of several other roses on the coffin of the murder victim. When the victim's parents approach the coffin to place their rose on it, most of the roses have vanished. (00:39:05)

Jeff Walker

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The Skull in the Desert - S1-E17

Continuity mistake: During the scene when Booth and Bones are driving to tell Angela that her boyfriend is dead, the scenery behind Booth jumps suddenly mid shot. Initially the scene is of a wide plain, then suddenly a mountain range appears. This scene was obviously shot on a sound stage, with the scenic background being projected onto screens around the vehicle, an old trick in movie making. It seems that somebody mistimed the loop of the tape they were using. (00:12:30)

roboc

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The Graft in the Girl - S1-E20

Continuity mistake: When Angela asks to see the girl's drawing, in the shot from the girl's perspective as she hands the pad over, the painting's quite small in the centre of the page. When it then cuts to Angela's point of view it takes up nearly the whole page. (00:02:45)

Jon Sandys

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The Man in the SUV - S1-E2

Continuity mistake: When Booth and Brennan are speaking with the widow explaining that her husband was murdered. Brennan has her arms folded across her chest, when the shot changes and you see her in the mirror her arms are hanging down at her sides, then when it changes back her arms are folded again. (00:15:00)

Boobra

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Pilot - S1-E1

Continuity mistake: Bones asks to get out of the car during their trip from the airport. Booth's SUV parks behind a yellow school bus. When he runs after her, the bus is no where in sight. (00:03:50)

ployp

The Parts in the Sum of the Whole - S5-E16

Continuity mistake: In this episode, Booth and Bones are telling Sweets about their "real first case" together - the case where they actually met for the first time. During this episode, Booth, Bones, and Angela take some evidence to Caroline, and Booth introduces them both (most importantly Brennan) to Caroline. However, in season 1, episode 19, "The Man in the Morgue", (which would have taken place after this initial first meeting) when Brennan is accused of murder in New Orleans, Booth has Caroline fly to NOLA to be Brennan's lawyer, and he introduces the two of them. If they had already been introduced during the first case Booth and Brennan worked on together, they would not have needed to be introduced here; they would have already known one another.

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Judas on a Pole - S2-E11

Trivia: Kathy Reichs, whose novels and experiences the series is based on, appears as one of the professors questioning Zack about his dissertation. (00:00:50)

Cubs Fan

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Question: Between season 2 and season 6 we periodically meet a serial killer called The Grave Digger who's actual name is Heather Taffet. Having watched the complete series a while ago, one thing was never made clear (or I might have missed it) How did Taffet physically bury the containers her victims were in? The twins were buried in a park in a submerged beer vat that is stated as being 6ft high. Bones and Hodgins are buried around 4ft underground in a car. How does she manage to bury them without being seen or interrupted?

Ssiscool

Answer: Answering my own question here but, having contacted various people involved in the production of Bones including Kathy Reichs, Hart Hanson, Eric Milligan, and Deirdre Lovegood who portrayed Taffet onscreen I finally have the answer. No-one know how she did it due to her constantly working alone. And she never revealed this information before her death.

Ssiscool

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