Continuity mistake: During the scene when Booth and Bones are driving to tell Angela that her boyfriend is dead, the scenery behind Booth jumps suddenly mid shot. Initially the scene is of a wide plain, then suddenly a mountain range appears. This scene was obviously shot on a sound stage, with the scenic background being projected onto screens around the vehicle, an old trick in movie making. It seems that somebody mistimed the loop of the tape they were using.
Continuity mistake: When Bones goes to open the vent on the wall in the mortuary while standing on the coffin, the shot from inside the grate shows her taking a step up and being exactly at head height for it. Only problem is that in the shot previous to this she was significantly short of the grate, and there was nothing on the coffin lid for her to step up onto.
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Continuity mistake: When Angela asks to see the girl's drawing, in the shot from the girl's perspective as she hands the pad over, the painting's quite small in the centre of the page. When it then cuts to Angela's point of view it takes up nearly the whole page.
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Continuity mistake: In this episode, Booth and Bones are telling Sweets about their "real first case" together - the case where they actually met for the first time. During this episode, Booth, Bones, and Angela take some evidence to Caroline, and Booth introduces them both (most importantly Brennan) to Caroline. However, in season 1, episode 19, "The Man in the Morgue", (which would have taken place after this initial first meeting) when Brennan is accused of murder in New Orleans, Booth has Caroline fly to NOLA to be Brennan's lawyer, and he introduces the two of them. If they had already been introduced during the first case Booth and Brennan worked on together, they would not have needed to be introduced here; they would have already known one another.
Continuity mistake: It is the evidentiary hearing, all characters are put on the witness stand so you get to see what all of them are wearing. The trial starts the next day and lasts at least three days, but when they are in court at the end of the trial for the reading of the verdict for the gravedigger they all have the exact same outfits on as the day of the evidentiary hearing.
Continuity mistake: When Angela and Hodges are working out the size of the silhouette on the wall, as Angela says "which I deny", she's got a relatively serious look on her face. We then cut to a shot from the other side of her, and she's suddenly smiling.
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Continuity mistake: At 20:13 into the episode, a bunch of victims are shown on the computer screen. If you read their info, several are from Arlington, Virginia. Booth has been trying to find victims from out of state, but says nothing when these come up on the screen. Shortly after this is shown, Hodgins tells him about a victim in Lynchberg, Virginia. He then takes action as the victim is from out of state. He should've noticed the others.
Continuity mistake: When Booth & Bones' taxi gets blown up & flips, the car lands upright, with nothing on the roof except the (now broken) taxi light. Yet when Booth squirms out the driver's side window, there are a few large chunks of asphalt sitting on the roof.
Continuity mistake: The person responsible for background shots while anyone is in a car driving, is grossly negligent in their continuity. Very rarely do Bones & Booth drive down a street without the background changing rapidly from urban to rural streets, and back. In a Season 1 episode, they're driving through a flat desert, with nothing in the background except scrub - and then suddenly, a mountain appears in the middle of the shot.
Continuity mistake: When Booth and Brennan are speaking with the widow explaining that her husband was murdered. Brennan has her arms folded across her chest, when the shot changes and you see her in the mirror her arms are hanging down at her sides, then when it changes back her arms are folded again.
Continuity mistake: The scene in which Wendell and Hodgins use scotch tape to take an x-ray has the number of photographic panels on which the x-ray appears switching from four (throughout most of the scene) to five (in the close up of the x-ray appearing).
Continuity mistake: The lawyer gives Booth the file on Howard Epps and he opens it with a picture on the left hand (screen right) side. Camera shows the file open and that photo is now on the right under a bulldog clip there fore making it impossible the photo fell and swapped sides when opened. The picture also rotates.
Continuity mistake: At the end after shooting Farheed, we see Booth with both hands on the railing. Camera shows a secret service operative opening the camera bag containing the bomb then cuts back to Booth who suddenly has his gun back in his hands and raised as if he had just fired.
Continuity mistake: When the director is looking at the 2 photos Booth hands him, there is a shot of the two photos one on top of the other neatly. Camera changes and they are no longer neatly on top of each other. The bottom one is sticking out and should have been visible in the previous shot.
Continuity mistake: When Brennan and Hodgins are in the aquarium tank recovering the skull, the hose for Brennan's air starts over her left shoulder. During the first close up where Brennan is actually retrieving the skull, the breathing apparatus has been reversed, so the hose is now over her right shoulder. All other shots the hose is over the left shoulder.
Continuity mistake: When Doctor Clark Edison is talking about Brennan and Booth not getting "butt naked" together in front of the camera Angela is standing next to Cam on the other side of the platform. The next scene after Hodgins tells Clark to "settle down" Angela hops from standing next to Cam to staying on the other side of the platform in front of Clark without you seeing her move.
Continuity mistake: Near the end, as Parker drinks his milkshake, its contents rise & fall (not counting his drinking some). Also, he moves the glass about enough to illustrate that it's fake - it would have spilled, the way he handles it.
Continuity mistake: Bones walks onto the lab platform - first, there's no beep from the card reader, and second, she comes up on the wrong side of the steps, where there is no card reader anyway. The mistake is that the production team seems to have completely forgotten about the requirement for card access to that platform. They've had card access required since Season 1; anytime someone doesn't swipe their card, alarms go off.
Continuity mistake: Bones tests some liquid to determine if blood is present. She uses about 2" in the test tube. The result shows a pink hue, not red. The camera angle changes, and now there's only about 1" in the tube, and it is red, not pink.
Continuity mistake: When Bones is dragged from the taxi after the explosion, she finds a tooth lodged in her arm (from bomb shrapnel). But she was pulled down for safety by Booth just before it went off, and was not exposed to the shrapnel - she was protected by the car door, and nothing was in a direct line to her. Added to that is the fact that her LEFT arm was hit - the arm that would have been on the 'inside/centre' of the front seat (the bomb went off on the right side of the car), and on which she was most likely lying - completely protecting that part of her body.
Continuity mistake: The assistant transplant coordinator tells Bones that another woman, Kelly DeMarco, had the same bone graft donor as Amy's. In the scene where they are analyzing the bone from Ms. DeMarco, Zach says she 'died of lung cancer 2 months ago.' Less than 10 seconds later, Booth says that she 'never smoked a cigarette in her whole life, only to die of lung cancer 8 months ago.'
Continuity mistake: Booth and Brennan arrive at the crime scene in the beginning of the show. After she has confirmed that the bones in the trunk belonged to a woman, a black car drives by and shots are fired. At first, the trunk of the car is less than halfway opened. Cut to the next shot and the trunk is fully opened.