Visible crew/equipment: Episode 22, Season 5 - "Vessel": Lex returns to the mansion, after being abducted, with his new powers. When he shows Lana by shooting his hand, they start talking by the stained glass window. The reflections in their eyes are supposed to be the light coming through the window, but are actually from a white screen used for lighting. The reflections in their eyes are rectangular to confirm this.
Continuity mistake: In Episode 22- Season 5 - "Vessel": At the start, Lex wakes up and heads towards an open field many miles away from the mansion. They show a camera shot of his face in the field and the sky is grey and cloudy, but in the very next shot the sky has turned blue and the sun is shining.
Audio problem: At the beginning, you hear the horses braying and the dog barking, but you can tell none of the animals are making those sounds. The sounds were added in afterwards.
Answer: The kryptonite only creates mutations when it reacts with the environment and an individual. Remember, the FDA and several environmental groups did check out Smallville after the meteor shower, but found no danger in the rocks. Obviously they're not always emitting mutating rays, or all the flora and fauna of the surrounding area would be horribly mutated.
Phoenix