Plot hole: In the end of the episode, Wolverine is seen recuperating after surgery removes the microchip in his brain, and his head is bandaged. Performing invasive surgery on Wolverine's brain isn't possible, since that would require going through his adamantium-infused skull and no conventional material is capable of that. Only a less invasive technique (such as going through the cranial sutres or cranial foramen) would have been effective and that most likely would not have required Wolverine's head to be bandaged (especially with his rapid healing mutant ability).
Plot hole: In the hoverdrone footage, Peter goes down suddenly during the gunfight, apparently from a wound to either the head or torso. However, there is no wound or blood on him and even his bulletproof vest has no marks except for the normal studs. If he had been hit in an extremity he would not have limply collapsed instantly. Sonrisa's goons are using automatic weapons that should have no trouble hitting him many times from that range of only a few meters. (00:54:00)
Into the Mouth of Evil - S2-E23
Plot hole: While fleeing the guru's disciples through a narrow side street, Jackie gets cut off by the van driven by Dr. Jamba and associates, stun-sprayed in the face, and then loaded into the van. But with three brutish-looking guys being so close to their quarry, the real crooks can take the time for dragging Jackie around to the back door instead of loading him through the side doors?
Plot hole: The way slipstream works is wildly inconsistent across the show. Sometimes, they have to travel a significant distance to find the nearest slip point, and other times, when it's required by the plot, there's a slip point conveniently right next to the ship.
Suggested correction: How is this a mistake? Unless the points are evenly distributed and all close to each other, they are going to be different distances away.