The Krakken (series 1)
Permanent Retirement (series 1)
Hunted (series 1)
The Alliance (series 1)
Plot hole: After Upgrade has successfully removed Rojo's cybernetic parts, the beam rifle she had used in the armoured car heist at the episode's start suddenly appears among them. But when the drone merged with her, she wasn't holding the gun and so it couldn't have been transformed along with her.
Lucky Girl (series 1)
Secrets (series 1)
The Big Tick (series 2)
Camp Fear (series 2)
Ultimate Weapon (series 2)
Ghostfreaked Out (series 2)
Factual error: When Ghostfreak first escapes the omnitrix, right before he rips off his outer layer of skin, he still has the omnitrix logo on him even though it should be gone with him being outside the watch. Submitted by Piemanmoo
Back With a Vengeance (series 2)
Factual error: It would be highly impropable for Kevin to find Vilgax frozen deep in space. As we see in first season's episode 'Secrets', Vilgax's ship was blasted apart in the upper atmosphere - after all, Ben escaped as Heatblast, and he wouldn't have been able to once beyond the stratosphere. Earth's gravitational pull would have kept Vilgax on Earth, not released him into deep space.
Be Afraid of the Dark (2) (series 3)
Plot hole: When the Corrodium Beam is shut down, there is a brief scene of the sky clearing at Mount Rushmore. But on the cliff face all four heads are seen, whereas the head of Theodore Roosevelt got crumbled in "Secrets," and it's too far forward to have been carved into the mountain face, in place (and same position) of the old head, yet again.
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