Continuity: Episode 14 - John Doe. Bellick is in the prison, and is being threatened by 'Banks.' As Banks and his crew walk away, in two different shots, you can see an elderly gentlemen (looking like Charles Westmoreland) walk across the screen, left to right. He does this twice, without there being time for him to run around.

Revealing: In the episode "Map 1213", when C-Note leaps out of the train, you can see that the man jumping out of the train is a stuntman. He is much chubbier than C-Note and his face is completely different.

Continuity: In the scene in Panama in the last episode Michael is on the boat and a boy comes along with some sodas. In that scene the sky is overcast. But in the next clip, when the boat is seen further away the sky is clear.

Continuity: Season 2, Episode 11: When Sara is being tortured in the bathtub Paul Kellerman receives a call. When we see a brief clip of Sara, her hair is a lot dryer than it was a second earlier.

Plot hole: Season 2, Episode 10: Linc and TJ are saved by Linc's father's people near Wilcox, Arizona. They are taken to Linc's father in Trinidad, Colorado. It is shown as taking only a short while, and the other events have not come very far during the transportation. Sarah is still getting ready to meet Michael. However, Wilcox - Trinidad is a 10 hour drive.

Continuity: When Lincoln and Michael are talking on the little pier, Michael talks about Westmoreland and his relationship to the truth. Lincoln has his head turned towards Michael through this, but as Michael says "There'd be no reason for him to lie about it", the angle changes and Lincoln is suddenly staring straight ahead, with no time to turn his head between shots.

Continuity: When Steadman is watching the agent put the bags that contain the remains of Veronica Donovan into the trunk of the silver car, the license plate changes between shots. The first time we see the car, the plate reads "1029Q", the second time (close-up shot as the agent closes the trunk) it reads "9417X".

Factual error: S02E01 - When the member of Terrance Steadman's security team shoots Veronica Donavan, the wound shown in the front of her head is an exit wound, while the exit wound should have been in the back of her head since she was shot from the front.

Continuity: When Steadman takes out his gun, he presses it to the back of Veronica's head. She does not flinch or shy away from the gun, but in the next shot, a close-up of Steadman, the gun muzzle is pointed at the camera with Veronica off-screen, and so the gun is suddenly not touching her.

Continuity: When Michael is sitting in the park he's staring at the front page of the newspaper. As the camera follows a man in the park you can see that Michael has opened to the midpages, but in the next shot Michael is looking at the front page again, before opening it another time.

Continuity: When Abruzzi is shot, he falls backwards and lands with his head pointing towards the wall of the motel. Cut to the FBI agent, then back to Abruzzi, and he is now lying the complete opposite way, with his feet pointing towards the wall.

Continuity: All throughout the car chase, the car Michael and Lincoln are in has a license plate on the front bumper. But after Bellick has forced their car off the road, the car makes a jump before hitting a tree, and while it is in mid-air you can see that the license plate has disappeared.

Continuity: Bellick's partner, Geary, is wearing a light grey T-shirt, with a very prominent sweat stain on the front. Throughout the episode, this stain constantly changes shape and size, even within two shots of the same scene, and sometimes it disappears altogether. This is best seen when him and Bellick are herding the prisoners to their car. In the close-ups of him, his shirt is completely dry, in long shots the sweat stain is there.

Continuity: During the car chase in the beginning of the episode, Bellick's car swerves to avoid hitting a truck as they go over a bridge. The next shot is from in front of the cars, and in the background you can see the bridge and a stretch of road behind it, but the truck has vanished.

Continuity: When agent Mahone is looking at the photocopied newspaper articles, at first he is holding a single sheet of paper, and you can read the headline in reverse through the paper: "Life Sentence for Mob Boss Abruzzi". We then get a close-up of the articles from his point of view, and he is now holding two sheets of paper, where the topmost reads "Governor's Daughter Wins Humanitarian award". Mahone places this paper on his desk, and you can see that he is once again only holding the one "Life Sentence." paper he had to begin with.