Continuity mistake: When they are driving up the mountain to get to her kids, they cross a river and they get hit on the passenger side of the truck shattering the window, but later when they show them going up the mountain there is a new window there.
Revealing mistake: After Dante's Peak explodes for the final time, the pyroclastic cloud rolls down the mountain toward the town. Harry shouts "Don't look back, kids, don't look back." and then we are shown a wide shot of the truck zooming down the ash-choked streets. Unfortunately, it's painfully obvious that this is either a miniature or CGI shot, because the truck isn't leaving any tracks behind it or trailing any clouds of ash despite its high speed.
Continuity mistake: Mr. Custer has an on and off problem with his glasses when registering Harry Dalton. When seen full face, his glasses are in his shirt pocket--yet, when seen from the back, he has his glasses on!
Trivia: When we see Paul in the van as it is taken over by the overflowing river, just as he hits the water, we hear the Wilhelm scream.