Question: So Batman rides the Bat-cycle into the alley in order to get to the Bat and fly away from the cops when he returns from exile. What happens then to the Bat-cycle? It doesn't seem like the Bat-pod has room to carry it and there's nowhere in the alley to hide it. Batman also doesn't set it to self-destroy (assuming that's an option as with the Bat-pod) so does he just leave it there?
Answer: He hides it away, presumably in the modified shipping container that we see him retrieve it from later on, once he returns to the city from captivity. Having left the Bat there so that he can use it if necessary, it would make sense that he'd also prepare somewhere to hide the Bat-pod when he changed vehicles to avoid having to leave it for the police.
Question: How does Bane kill Daggett? Did he break his neck? That doesn't seem likely though due to the screaming that can be heard. Did he suffocate him?
Answer: He did break his neck. You can actually hear a cracking sound when it happens. As for the screaming, you can actually still be alive for a few seconds, the screaming only lasts for a couple of seconds as well.
Question: SPOILER: How on earth did Bruce survive that bomb explosion?!
Answer: It is revealed afterward that he had fixed the autopilot on his aircraft. At some point prior to the explosion he bailed out and the craft continued on without him, taking the bomb far enough away for him to survive the blast.
Question: Does Bruce Wayne or Batcycle use EMP Burst or something similar to turn off all reporters cameras at the Charity Ball or Subway lights during the stock market chase and the aftermath?
Answer: Yes, it would seem that he carries some sort of device that produces that effect in a small area around him, plus the gun with the lights at the end of the "barrel" appears to have the same effect over a longer range, as he uses it to take out a motorcycle some distance ahead of him.
Question: SPOILER: At the end of the movie, it is common knowledge that Bruce Wayne is dead. A tombstone is erected and Wayne Enterprises are executing his will. Since everyone knows Batman died, did Gordon (or someone else) out Bruce as Batman? Fair enough, they could've come up with a cover story for Bruce's death, but surely people would get suspicious if Bruce Wayne and Batman died around the same time.
Answer: Given that no accurate records would have been kept of what occurred in Gotham during Bane's occupation, it would be very easy to claim that Bruce had been in the city when the bridges fell, been captured and subsequently executed by forcing him out on the ice, as had happened with many other socialites. Plenty of people died during Bane's takeover of the city, particularly in the final hours. There's no reason why Bruce would stand out among them as a candidate, and even if anybody did harbour some suspicion, it could hardly be proven.
Question: Let's say the Joker was alive and released along with all the other prisoners. If he learns that Bane at one point tried to have Batman killed, what would Joker do? Would he try to have Bane, and by extension Talia, killed? If Batman came back, would Joker work with him to kill Bane, or allow Gotham to be destroyed. Due to different goals, who Joker and Bane somehow face off? And would some old followers betray Bane and follow Joker instead?
Answer: It is beyond implausible to presume that the Joker would have been locked away in Blackgate Prison. The previous movie has shown the Joker to have been a terrorist and extremely psychotic. Someone like the Joker would have been put away in a far more secure prison than Blackgate, one that has far more higher grade security and one that is specifically designed to hold people like him.
Question: What did Batman mean when he said to Bane "Then you have my permission to die"? I know he was repeating what Bane said to him earlier, but does that mean he was going to kill him?
Answer: It was probably on his mind. Not sure if he would have actually done it, but he needed Bane to tell him where the trigger was, after that maybe he guessed Bane would die anyway, having failed his mission. It could be either that Batman kills him indirectly, he commits suicide or he gets the death penalty. (Also, plausibly, he could have been hinting that Bane will inevitably die of natural causes after a long, dissatisfying life in prison, a reversal of how Bane attempted to defeat Batman in the same fashion).
Question: Why did Bane have a problem with the two men bringing commissioner Gordon down into the sewers? Also how did John Blake know which outflow Jim Gordon would come out, of since the guy said that the sewer leads to many outflows?
Answer: Bane had a problem with it because it exposed his plans to the GCPD. Blake knew which outflow to go to because of the body found previously. All bodies from that area of the sewers end up in the same place, Bane's men just don't know where that is.
Question: The part where Talia's mother gets attacked and the doctor forgets to lock the cell, why did he need to lock the cell, and why did they attack her? Were there no other women in the Pit?
Answer: The prison had a very large male population. It didn't appear to hold too many women. Thus, though it is never stated in the film, she was obviously always in danger of being physically attacked or sexually assaulted by prisoners. Hence, her cell door needed to be locked.
Question: This has to do with The Dark Knight and The Dark Knight Rises. When Joker is caught by police, I'm assuming he got sent to Arkham Asylum. When Bane released all the prisoners, what became of the Joker?
Answer: Bane actually freed the prisoners at Blackgate Prison, not Arkham. The Joker's whereabouts are never revealed, but the novelization states that he is the lone inmate at Arkham. Realistically, the Joker probably would have received the death penalty for his crimes sometime between the 8 years that have passed between films.
Question: Each film in this trilogy had its own theme. According to Christopher Nolan, Batman Begins was "Fear," The Dark Knight was "Chaos" and "Escalation." Did he ever say what the theme for The Dark Knight Rises is? I've heard it could be "Redemption" or "Pain."
Answer: Yes, the theme for The Dark Knight Rises is pain.
Question: Did Bruce/Batman plan on faking his death before the flood made reconnecting the bomb impossible? It seemed like before that happened the plan was just to deactivate the bomb, then hopefully things would go back to normal. Does Bruce just realize the opportunity this would create in the last minute and take it? Also, does Bruce have to sneak back into Gotham to tell Selena that they're going to run away and start a new life, because it seems impossible it was a plan they already had worked out as a nuclear bomb was about to go off.
Answer: Well, as no details regarding Bruce's thought processes are given in the film, it's impossible to say for sure, but, no, the most likely chain of events is that he never intended to fake his own death in such a manner, because the aim all along was to reconnect the reactor core and prevent the bomb from ever detonating. Most probably the plan was to eliminate Bane, stop the bomb from going off and then simply retire Batman again, once the city was back on its feet, just as he did before. When the plan to reconnect the reactor core was scuppered, he had to improvise, the result being that the world considers Batman to be dead, rather than simply having disappeared again. And, no, Bruce snuck back into Gotham to stop Bane - given that she betrayed him to Bane, it's pretty unlikely that he had any serious thoughts regarding a new life with Selina at that point. Although he believes that there's more to her than she claims, it's only when she selflessly returns to help him save the city, despite the very real chance of dying in a nuclear blast, that a life together really becomes a possibility.
Question: Even though everything seems to be resolved at the end, Gotham was still in rough shape when Bruce faked his death. Thugs and actual villains from Arkham were loose in the city, and there was no Batman to stop them. Although we see towards the end that Bruce really does want to hang up the cowl, it seems unlikely that he would leave Gotham behind if he didn't have belief in them to sort things out. How did Bruce plan to solve this? Did he plan Batman's "death" to look like he died as a martyr, just like his parents death did? Ras' al Ghul did tell him that after Thomas and Martha's death Gotham was inspired to keep itself alive. Or is Bruce just putting his faith in John Blake to step in as the next Batman?
Answer: Gotham wasn't in great shape when he retired after the events of The Dark Knight, but, with the new powers bestowed upon them by the Dent Act, the city authorities were able to clean up the city without his assistance. While the Dent Act has been somewhat discredited by the revelations about Dent himself, the positive effects on the city that it brought would be obvious to anybody, and thus it's unlikely, particularly given the role of the police in ending Bane's rule, that those powers would be stripped from them any time soon. It will take time, but they have what they need to do the job, regardless of what Blake ultimately decides to do.
Question: When Bruce Wayne steps out of his sports car to enter the fundraiser, a lot of paparazzi start photographing Bruce Wayne then you hear a strange noise and all the photographers cameras shut off/down. Did Bruce Wayne have a gadget to cause this or was it someone else.
Answer: Yes. Bruce is seen to have pressed a device similar to car alarm. It was most likely a small scale electric magnetic pulse. One designed to switch off certain devices (such as cameras). The same technology is used later during the movie when Batman re-appearances during the chase scene (the lights turn off temporarily).
Question: Wayne is supposed to lead the reactor back to the containment chamber so it can be flooded, as the waters will cause it to safely shut down. When Talia floods the chambers, Bruce is then forced to carry the bomb a safe distance away, over the ocean. If the flooding of the chamber could've stopped it, why couldn't Wayne just drop the reactor into the ocean to "kill it", rather than, say, going to all of the effort of carrying it a safe distance away? Or was it all just part of his ploy to appear dead?
Answer: You've misunderstood, I'm afraid. Bruce and Selina were battling to get the reactor core back to the containment chamber so that it could be reconnected to its support equipment, which would stabilise the core and prevent detonation, not so that it could be flooded there, which would do nothing to stop it blowing. Talia ordered the flooding of the chamber so that reconnection was no longer possible, forcing Bruce to fly the core out to sea, getting it out of range of Gotham before it blew.
Question: SPOILER: What exactly were Talia and Bane waiting for when they stalled the detonation of the bomb? Why would they need to plunge the city into chaos before destroying it, and then wait to the very last minute to actually blow it?
Answer: Same reason she wanted Batman alive when the bomb went off: to adequately and thoroughly punish the people of Gotham.
Question: What exactly was the point of Daggett? He funds Bane's endeavors with the promise that he will take over Wayne Enterprises, Bane sabotages the stock market to make Wayne go broke, and then, almost immediately after doing this, Bane kills him. Why even have Daggett in on the scheme if the (supposed) plan was to have Miranda Tate take over Wayne Enterprises?
Answer: Because they needed somebody to be the fall guy. For Tate to take control, somebody needs to take Bruce Wayne's majority share out of the picture and the highly ambitious Daggett is the perfect candidate. They use him to further the plot to remove Bruce from his position, while Miranda cultivates Bruce's trust, positioning herself as the person that Bruce would turn to for help. Daggett's hostile attitude would alienate him from the other board members, whereas Tate, carrying Bruce's seal of approval as his nominal successor, would have a much easier time. They used Daggett to do the dirty work, then took him out of play, allowing Miranda Tate to step in unopposed and, importantly, still trusted by Bruce.
Question: Bane has a nifty facial device that apparently keeps him alive. When Batman damages it a bit, Bane looses power, nearly faints even. Bane is a beefy fellow, but how does he eat?
Answer: The mask doesn't actually keep Bane alive, it feeds him a constant stream of pain-killing gas in order to stop the excruciating pain from his injuries preventing him from functioning normally. When the League of Shadows rescue him from the prison, Bane appears to simply have his face wrapped in bandages, and certainly would have no access to a constant supply of painkillers in that environment. With this in mind, it seems safe to say that he is capable of removing the mask, it's just highly unpleasant for him to do so. Most likely when he wants to eat, he simply mentally prepares himself, takes the mask off and puts up with the pain long enough to finish his meal.
Question: In the flashback scene of Bane inside the prison, why were prisoners attacking Bane?
Answer: Bane is acting as a protector for the young Talia, keeping her safe and ultimately holding off the other prisoners while she escapes. As for what a bunch of male prisoners might want with a young girl, well, it's not going to be nice.
Question: SPOILER: What exactly was Bane's and Talia's plan? Had Batman not thwarted the attempt at blowing up the bomb, were the bad guys simply content with being killed in the blast also as long as Gotham was destroyed as well?
Answer: Yes. Their entire purpose was to finish what Rha's had started; no matter what the cost.