There are two scenes in the highway chase sequence that are taken directly out of Michael Bay's film "The Island". The scene where one of the Decepticons lands on a car's hood and the scene where you see a SUV being flipped in the air when the Decepticons are running. Both scenes are just edited a bit to be part of the Transformers movie. Here's a YouTube video on these scenes: http://www.youtube.com/watch?v=H7kcqB3thJM. See more...
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Continuity: During the Mexican Standoff, Ironhide finally forces the spike into the face of one of the Dreads and lifts him up by it. Pay attention to the red car underneath: when Ironhide smashes the Decepticon's face, the windshield is fine, but when he puts him down, the windshield is suddenly damaged - before the Decepticon lands.
Continuity: Just before the soldiers jump out of the Osprey, there is a shot of them running for the exit. You can see a very big gun on the soldier's chest. But in every shot of them wingsuiting through Chicago, none of the soldiers can be seen carrying any kind of weapons, let alone big LMG's and assault rifles which they use after landing.