Continuity: When on the roof, Neo fires at the enemy agent, who dodges all his bullets, but the windows of the building behind him are undamaged. (Time)

Other: When Neo is running along while shooting, it switches to a shot of a soldier firing a shotgun. Just before Trinity kicks it out of his hands, he's firing at the same spot over and over. Trinity is behind him, and Neo is moving, so what is he shooting at? (Time)

Continuity: In the first scene in which Neo appears, we see him from above, sleeping in front of his computer. The keyboard he is using is a Microsoft Natural Keyboard Pro with the atypical curved key configuration. When messages begin appearing on his screen, he tries to stop them by hitting various keys, but the closeup of the keys show keys from a standard keyboard that are clearly not the keys on a Natural Keyboard Pro. (Time)

Continuity: In the interrogation room. Mr. Smith has a green file with him with Neo data accumulated. Smith opens the file and leafs through a few sheets, without removing any, but in subsequent shots we can see that some sheets have been removed from the file and put on the left. (Time)

Continuity: In the beginning of the move when Neo gets the FedEx envelope, he is shown at his desk opening the envelope and then pouring it out...As he is pouring the phone out, with the green packing label on the top, the shot cuts "seamlessly" to a close up of the phone being poured out the rest of the way.  However, the envelope is now flipped over.  The logo FedEx logo is now on top (the packing label is facing down). (Time)

Continuity: In the lobby shoot up scene, when Trinity kicks the shotgun into her hands, watch carefully. She shoots, cocks, then the shot changes to her cocking again. And then, a shell comes out of the shotgun right after the shot. (Time)

Continuity: In the kitchen scene with Neo and the Oracle, the Oracle is baking cookies. When the Oracle takes the cookies out of the oven and brings them to the table there are 4 cookies on the plate. As she offers a cookie to Neo there are 6 cookies on the plate. (Time)

Continuity: In the scene where Neo is brought out of the building you clearly see the police officer push the car door open and turn his head to the rear of the car, yet in the next cut where we are viewing the scene from the reflection in Trinity's side view mirror his head is facing forward again. (Time)

Continuity: When they are down on the ground shots they show everyone driving on the right side of the road, but when there are aerial shots, you can see everyone driving on the left side of the road.

Factual error: When Trinity is being arrested, you hear the cops all burst into the room and cock the hammers on their Glocks. The Glock doesn't have an external hammer. To load the weapon, you have to pull the slide back and release it. (Time)

Continuity: On the skyscraper, when Neo and Trinity kill all of the soldiers, Agent Brown comes to the roof. Neo immediately draws his guns and fires until both of his clips are empty. After that, Neo drops his guns, just as Agent Brown aims at him. During Bullet-Time there are no guns on the floor. When he hits the ground, then the guns are left and right of his legs. (Time)

Continuity: When Morpheus first takes Neo into the Construct and is explaining it all to him, you can see Neo's reflection in his glasses, but when the camera shows Neo, he is wearing different clothes and standing in a different position and moving. (Time)