After Stifler drinks the semen-filled beer, Kevin says, "Hey Stifler, how's the pale ale?" Before objections from the MPAA arose, the original line was, "Hey Stifler, how's the man chowder?" See more...
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When Finch is moping through the house, depressed, he goes through a door marked "keep out". The door handle is on the left side, meaning that from inside the room the handle must be on the right. However, when he plays with the pool balls, we can see that the door he must just have come through (there's no other door visible) has the handle on the left.
In the famous Nadia on the internet segment, there is a quick shot of the computer before Jim starts to get undressed. If you look on the desk next to the keyboard there is a gray t-shirt. It wasn't there when Jim was setting up the camera and Jim hasn't begun to undress yet. Obviously shot after Jim threw the shirt on the Web cam and it slid off.
Finch runs into the girl's bathroom when the laxatives affect him. He tries to take out a toilet seat cover, but there are none left. The side shot shows a corner of the box hanging down below the dispenser, whereas when the shot changes to the front, there is no visible corner. It then returns to the side and the visible corner, and back to the front with no corner.
In the final scene where the boys are discussing their love lives, watch the man eating a cream roll/hot dog in the background. In one shot he takes a large bite. The camera changes angles to one of the boys and quickly returns to the wider shot. The man is deep in conversation only two seconds after biting down on half a hot dog.