Near the end of the movie, Paris hands the Sword of Troy off to a young man called Aeneas saying something along the lines of "Troy will always have a future so long as this sword is held by a Trojan." This was a little nod to Virgil's Aeneid which describes the travels of Aeneas after the Trojan War and who was an antecedent of Romulus and Remus (the legendary founders of Rome). See more...
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This film is loosely based on the Iliad, not a direct copy. As such, any book/film differences aren't valid. If you're interested in the "facts" of the story, such as they are, check them at the Wikipedia.
Continuity: In Sparta, when Paris enters Helen's room, she faces him and says, "You shouldn't be here," When she turns around to face the wall, now there are short curls at her forehead and the hair curls at the sides of her face are now curlier and neater. Then when she is standing in front of Paris with her hands at her sides, in the two shots facing her, her hair goes from the front of her shoulders to behind, and the cute curl at her forehead is gone. This type of thing occurs throughout the film in consecutive shots.
Continuity: When Hector stops Helen from leaving during the night, her cheeks and the area around her eyes are both very red, and her eyes are tearful with tears down her cheeks. In the shot from behind her, when she briefly turns round her cheeks are not red or wet and though her eyes are teary, they are not as teary and red as the shots facing her.
Continuity: When Achilles first starts fighting on the beach of Troy he is holding his shield with his left hand. Later in the fight he switches to his sword and is able to swing his shield onto his back because of a leather strap around his neck and shoulder. There was no strap around his neck or on his shield when he was fighting earlier.
Continuity: In the scene near the beginning, where Achilles is standing at the palace where the golden statue is, he throws a spear into one of Hector's men. When the shot goes to him, you can see that he has his left arm stretched out; you can see his hand. Yet when Hector rides on, the soldier on the floor now has his arm beside him and not outstretched.
Revealing: When Boagrius throws the first spear in the shot facing Achilles, Boagrius leans in to throw it and then stands straight just when the (CG) spear nearly reaches Achilles, who still has his shield at his side. In the next shot facing Boagrius the (CG) spear is still near Boagrius, who stands straight, and Achilles raises his shield for the incoming spear. This spear casts a (CG) shadow as it heads toward Achilles and when the ('real') spear tip penetrates Achilles' shield, there are other (CG) spear shadows on the ground heading toward Achilles - but NO spears.
Revealing: Odysseus normally has wavy/curly hair that reaches the base of his neck, yet just before Hector cuts Patroclus' throat, when Odysseus' helmet slips forward as he fights and the white cap is visible, his hair is very short and straight in back. It's also apparent earlier, when he visits Achilles in Phtia.
Continuity: After the Greeks climb out of the 'Trojan' horse, some run to the front gate. There is a long rope hanging on the left side of the gate, the base of the left stone pillar that holds the flame is aligned with the edge of the huge gate's door frame and the pillar stands perfectly upright. However, as the camera pans to the left, when the soldiers start to run up the stairs on the left, the rope is gone, the actual tall stone pillar with flame is moved at least two feet and it now stands very crookedly. (This has nothing to do with camera angles.)
Continuity: The cuts on Hector's face change and the one over Hector's left eyebrow actually changes direction, as well as other characteristics in many shots. When he shows his wife the tunnel, the top of the cut points towards the left side of his face, but when he stands at the gate and glances back at Helen, the top of the cut points up towards his right.
Visible crew/equipment: When Achilles mounts his horse, the boy hands him his helmet and then his shield. After he says, "The Thessalonian you're fighting..." at the start of the close-up when the boy has his hands up as gives him the shield, the grey mic is visible right under the neckline of his outfit.
Continuity: While in Phtia after Odysseus says, "My wife will feel much better...I'll feel much better," Achilles takes the sword out of Patroclus' hand and then pats him on the bottom with his own sword. As he does this in the shot from behind Achilles, the ground area in front of the bushes is sword free. However, as Odysseus says, "A thousand ships," there is a sword lying on the ground in front of the bush. This is either a continuity error or simply the lack of sound of a sword being thrown to the ground, since it's likely to be Patroclus' sword that Achilles threw.
Continuity: When Glaucus, Paris and other Trojans stand at the ready, the Greeks break through the palace gates, stream into the room and begin to fight. However, after Paris runs up the stairs, pulls and releases the arrow to hit the soldier's neck, in this shot Glaucus and the Trojans stand on the opposite side facing the Greeks, they have not yet even begun to fight.