Audio problem: When Michael is forced to do "errands" for Brennen, they stop by Jonathan Carver's house to get numbers from him for a voice key. The code played back at the facility is 71348. He says "3" in a medium pitch (tone) at the house, but it is high pitched when played back at the facility; he says "8" in a medium pitch, and it's also high pitched later. And finally he says "9" in a low pitch and it's played back medium pitch. Also very obvious is the fact that Jonathan never says "1" or "7."
Continuity mistake: In the episode "The Education of Jaime Sommers", when Jaime and Tom are having coffee, the size and position of cappucino foam on Jaime's nose changes from shot to shot.
Continuity mistake: When we see Coraline in Mick's vision of when he was taking her dress off at a party, her tattoo is under one of her shoulders (I think it was her left one) but later on in the series we see Morgan/Coraline wipe off the make-up on where her tattoo is...on the opposite side.